sample of publications
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articles
- Cognitive resource allocation determines the organization of personal networks. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME). 115:8316-8321. 2018
- Statistical theory of phenotype abundance distributions: A test through exact enumeration of genotype spaces. EPL. 123. 2018
- On the networked architecture of genotype spaces and its critical effects on molecular evolution. Open Biology. 8:1-18. 2018
- Adding levels of complexity enhances robustness and evolvability in a multilevel genotype-phenotype map. Journal of the Royal Society Interface. 15. 2018
- Sheldon spectrum and the plankton paradox: two sides of the same coin-a trait-based plankton size-spectrum model. JOURNAL OF MATHEMATICAL BIOLOGY. 76:67-96. 2018
- Disentangling the effects of selection and loss bias on gene dynamics. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AME). 114:E5616-E5624. 2017
- Enumerating secondary structures and structural moieties for circular RNAs. JOURNAL OF THEORETICAL BIOLOGY. 419:375-382. 2017
- Distribution of genotype network sizes in sequence-to-structure genotype - phenotype maps. Journal of the Royal Society Interface. 14. 2017
- Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation. Biology Direct. 12:1-15. 2017
- Fair linking mechanisms for resource allocation with correlated player types. COMPUTING. 98:777-801. 2016
- The growth threshold conjecture: a theoretical framework for understanding T-cell tolerance. Royal Society Open Science. 2015
- General approach for dealing with dynamical systems with spatiotemporal periodicities. PHYSICAL REVIEW E. 91. 2015
- Reputation drives cooperative behaviour and network formation in human groups. Scientific Reports. 5:1-6. 2015
- Evolution on neutral networks accelerates the ticking rate of the molecular clock. Journal of the Royal Society Interface. 12 (20141010):1-11. 2015
- toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map. Scientific Reports. 4. 2014
- Spreading of intolerance under economic stress: results from a reputation-based model. PHYSICAL REVIEW E. 90:1-13. 2014
- A comparative analysis of spatial Prisoner's Dilemma experiments: Conditional cooperation and payoff irrelevance. Scientific Reports. 4:1-9. 2014
- Gender differences in cooperation: experimental evidence on high school students. PLoS One. 8:1-10. 2013
- Comment on "Ratchet universality in the presence of thermal noise". PHYSICAL REVIEW E. 88:1-3. 2013
- Time-Shift invariance determines the functional shape of the current in dissipative rocking ratchets. Physical Review X. 3:1-10. 2013
- Evolution on genotype networks leads to phenotypic entrapment. ArXiv.org. 1-5. 2013
- Evolutionary stability and resistance to cheating in an indirect reciprocity model based on reputation. PHYSICAL REVIEW E. 87:1-9. 2013
- Three is a crowd in iterated prisoner's dilemmas: experimental evidence on reciprocal behavior. Scientific Reports. 2:1-7. 2012
- Local-based semantic navigation on a networked representation of information. PLoS One. 7:1-10. 2012
- Heterogeneous networks do not promote cooperation when humans play a Prisoner's Dilemma. Proceedings of the National Academy of Sciences of th United States of America. 109:12922-12926. 2012
- Stability and robustness analysis of cooperation cycles driven by destructive agents in finite populations. PHYSICAL REVIEW E. 86. 2012
- On the coexistence of cooperators, defectors and conditional cooperators in the multiplayer iterated Prisoner's Dilemma. JOURNAL OF THEORETICAL BIOLOGY. 300:299-308. 2012
- Generosity pays in the presence of direct reciprocity: a comprehensive study of 2x2 repeated games. PLoS One. 7:1-12. 2012
- Human behavior in Prisoner's Dilemma experiments suppresses network reciprocity. Scientific Reports. 2 (Article 325). 2012
- Individual strategy update and emergence of cooperation in social networks. JOURNAL OF MATHEMATICAL SOCIOLOGY. 36:1-21. 2012
- Disentangling categorical relationships through a graph of co-occurrences. PHYSICAL REVIEW E. 84:1-8. 2011
- Ratchet effect on a relativistic particle driven by external forces. Journal of Physics A-Mathematical and Theoretical. 44:1-10. 2011
- Severe hindrance of viral infection propagation in spatially extended hosts. PLoS One. 6:1-13. 2011
- The Joker effect: cooperation driven by destructive agents. JOURNAL OF THEORETICAL BIOLOGY. 279:113-119. 2011
- Crossed-ratchet effects and domain wall geometrical pinning. PHYSICAL REVIEW B. 83:1-13. 2011
- Species assembly in model ecosystems, I: Analysis of the population model and the invasion dynamics. JOURNAL OF THEORETICAL BIOLOGY. 269:330-343. 2011
- Species assembly in model ecosystems, II: Results of the assembly process. JOURNAL OF THEORETICAL BIOLOGY. 269:344-355. 2011
- Struggle for space: viral extinction through competition for cells. PHYSICAL REVIEW LETTERS. 106:1-4. 2011
- Social experiments in the mesoscale: humans playing a spatial Prisoner's Dilemma. PLoS One. 5(e13749):1-9. 2010
- Neutral networks of genotypes: evolution behind the Curtain = Redes neutras de genotipos: evolución en la trastienda. Arbor. 186:1051-1064. 2010
- Catastrophic regime shifts in model ecological communities are true phase transitions. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT. 2010:1-20. 2010
- Mathematics of evolution. Newsletter of the European Mathematical Society. 76:28-37. 2010
- Symmetries Shape the Current in Ratchets Induced by a Biharmonic driving Force. PHYSICAL REVIEW E. 81:30102. 2010
- Evolutionary Game Theory: Temporal and Spatial Effects Beyond Replicator Dynamics. Physics of Life Reviews. 6:208-249. 2009
- Statistical Mechanics of Ecosystem Assembly. PHYSICAL REVIEW LETTERS. 103. 2009
- Effect of spatial structure on the evolution of cooperation. PHYSICAL REVIEW E. 80. 2009
- Las matemáticas de la evolución. La Gaceta de la Real Sociedad Matemática Española. 12:667-686. 2009
- Promotion of Cooperation on Networks? The Myopic Best Response Case. EUROPEAN PHYSICAL JOURNAL B. 71:587-595. 2009
- Phase Diagram of a Two-Dimensional Lattice Gas Model of a Ramp System. JOURNAL OF CHEMICAL PHYSICS. 131. 2009
- Smectic and Columnar Ordering in Length-Polydisperse Fluids of Parallel Hard Cylinders. MOLECULAR PHYSICS. 107:415-422. 2009
- The Shared Reward Dilemma on Structured Populations. Journal of Economic Interaction and Coordination. 4:183-193. 2009
- Phase Behavior of Parallel Hard Cylinders. JOURNAL OF CHEMICAL PHYSICS. 128:194901. 2008
- Fundamental-Measure Density Functional for Mixtures of Parallel Hard Cylinders. PHYSICAL REVIEW E. 77:51205. 2008
- The Shared Reward Dilemma. JOURNAL OF THEORETICAL BIOLOGY. 251:253-263. 2008
- Emergence and Resilience of Cooperation in the Spatial Prisoner's Dilemma Via a Reward Mechanism. JOURNAL OF THEORETICAL BIOLOGY. 250:475-483. 2008
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book chapters
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conference contributions
- Adding levels of complexity enhances robustness and evolvability in a multilevel genotype-phenotype map 2018
- Cognitive resource allocation determines the organization of personal networks. 25-25. 2018
- Cognitive resource allocation determines the structures of personal networks 2018
- Distribution of genotype network sizes in sequence-to-structure genotypephenotype maps 2018
- Dunbar's numbers and social structure: models and experiments 2017
- Dynamical systems with spatiotemporal periodicities trough the symmetries 2017
- Generic model of population dynamics and transitions between biological interactions 2017
- Modeling paradigm shifts in cultural evolution 2017
- Promiscuity of function, changing environments, and molecular evolution 2017
- Modeling paradigm shifts in cultural evolution 2016
- Neutral evolution and the acceleration of the molecular clock. 7-7. 2015
- Reputation drives cooperative behaviour and network formation in human groups 2015
- Fair Linking Mechanisms for Resource Allocation with Correlated Player Types 2014
- Fair linking mechanisms for resource allocation with correlated player types. 70-83. 2014
- Reputation drives cooperative behaviour and network formation in human groups 2014
- toyLIFE: un universo de juguete para comprender mejor la evolución 2014
- Cooperation in human societies: theory and experiments. 86-87. 2013
- Evolution on genotype networks leads to phenotypic entrapment 2013
- Neutral evolution and phenotypic entrapment 2013
- Neutral evolution and phenotypic entrapment 2013
- toyLIFE: a toy Universe for gaining insight into biological evolution 2013
- Desambiguación semántica mediante una red de co-ocurrencias 2012
- El efecto ratchet en la partícula relativista. 64-64. 2012
- Estocasticidad y exclusión competitiva en comunidades ecológicas 2012
- Evolving on phenotype landscapes. 770. 2012
- How reciprocity renders networks irrelevant for cooperation in social dilemmas 2012
- La corriente promedio en los "rocking ratchets" 2012
- Network Reciprocity, Large-Scale Experiments and the Prisoners Dilemma: the Last Word 2012
- Prevalencia de la generosidad en reciprocidad directa 2012
- Realistic Human Behavior and Prisoners Dilemma on Networks 2012
- There is no such thing as network reciprocity when humans play a Prisoner´s Dilemma. 6. 2012
- Universal reciprocal behavior in iterated prisoner's dilemmas: Three is a crowd. 117. 2012
- Universal reciprocal behavior in iterated prisoner's dilemmas: three is a crowd 2012
- Emergence of Responsive Strategies in Iterative Games 2011
- Emergencia de estrategias en juegos iterados con reciprocidad directa. 154. 2011
- Evolutionary Dynamics and Conditional Cooperation in the Iterated Prisoners Dilemma 2011
- Huge Progeny Production during the Transient of a Quasispecies Model of Viral Infection, Reproduction and Mutation. 1676-1681. 2011
- Human Behavior on Networks: Lessons and Perspectives from Game Theory 2011
- Invasion Dynamics in Iterative Games 2011
- La lucha por el espacio: extinción viral debida a la competencia por celulas 2011
- Prisoner's Dilemma on a Sizeable Network: An Experiment with Human Subjects. 39-39. 2011
- Prisoner's Dilemma on a Sizeable Network: Experiment and Theory. 23. 2011
- Replicator Dynamics for the Multiplayers Prisoner's Dilemma with "Moody" Conditional Cooperators. 97-97. 2011
- The Struggle for Space: A New Mechanism to Viral Extinction 2011
- An Exactly Solvable Model for Theoretical Ecosystem Assembly 2008
- Dinámica evolutiva de ecosistemas 2008
- Evolutionary Games and Cooperation: The Complex Effect of Population Structure 2008
- Funcional de medidas fundamentales para mezclas de cilindros duros paralelos 2008
- Juegos evolutivos y cooperación en poblaciones estructuradas: el papel de la estructura social y la dinámica evolutiva 2008
- Promotion of Cooperation on Networks? The best Response Case 2008
- Statistical Mechanics of Ecosystems 2008
- Statistical Mechanics of Ecosystems 2008
- Teoría de juegos evolutiva 2008
- Teoría de juegos evolutiva 2008
- The Complex Effect of Population Structure on the Evolution of Cooperation 2008
- Understanding the Effect of Population Structure on the Evolution of Cooperation 2008