sample of publications
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articles
- Entropic contribution to phenotype fitness. Journal of Physics A-Mathematical and Theoretical. 56:1-24. 2023
- The long and winding road to understanding organismal construction: Reply to comments on "From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics". Physics of Life Reviews. 42:19-24. 2022
- COP1 dynamics integrate conflicting seasonal light and thermal cues in the control of Arabidopsis elongation. Science Advances. 8:1-12. 2022
- Seeking patterns of antibiotic resistance in ATLAS, an open, raw MIC database with patient metadata. Nature Communications. 13:1-15. 2022
- From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics. Physics of Life Reviews. 38:55-106. 2021
- The antibiotic dosage of fastest resistance evolution: Gene amplifications underpinning the inverted-U. MOLECULAR BIOLOGY AND EVOLUTION. 38:3847-3863. 2021
- Populations of genetic circuits are unable to find the fittest solution in a multilevel genotype-phenotype map. Journal of the Royal Society Interface. 17. 2020
- Parsimonious scenario for the emergence of viroid-like replicons de novo. Viruses-Basel. 11:425. 2019
- Statistical theory of phenotype abundance distributions: A test through exact enumeration of genotype spaces. EPL. 123. 2018
- On the networked architecture of genotype spaces and its critical effects on molecular evolution. Open Biology. 8:1-18. 2018
- Adding levels of complexity enhances robustness and evolvability in a multilevel genotype-phenotype map. Journal of the Royal Society Interface. 15. 2018
- Estimating wind dispersal potential in Ailanthus altissima: the need to consider the three-dimensional structure of samaras. PLANT BIOSYSTEMS. 151:316-322. 2017
- Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation. Biology Direct. 12:1-15. 2017
- Sink strength manipulation in branches of a Mediterranean woody plant suggests sink-driven allocation of biomass in fruits but not of nutrients in seeds. ACTA PHYSIOLOGIAE PLANTARUM. 38:1-6. 2016
- Gone with the wind and the stream: dispersal in the invasive species Ailanthus altissima. ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY. 73:31-37. 2016
- Mutation-selection equilibrium in finite populations playing a Hawk-Dove game. Communications in Nonlinear Science and Numerical Simulation. 25:66-73. 2015
- toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map. Scientific Reports. 4. 2014
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conference contributions
- Parsimonious scenario for the emergence of viroid-like replicons de novo. 159-159. 2020
- Modelling the evolution of antibiotic resistance in Escherichia coli 2019
- Adding levels of complexity enhances robustness and evolvability in a multilevel genotype-phenotype map 2018
- Promiscuity of function, changing environments, and molecular evolution 2017
- toyLIFE, or the importance of being promiscuous 2016
- toyLIFE: the complexities of the genotype-phenotype map 2015
- toyLIFE: un universo de juguete para comprender mejor la evolución 2014
- toyLIFE: a toy Universe for gaining insight into biological evolution 2013
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theses